Culture Collections

Bacteria and Mycoplasmas detail

Conditions of Supply of Microbial Pathogens: Safety





Bacteria Collection: Gordonia terrae

NCTC Number: NCTC 10669
Current Name: Gordonia terrae
Original Strain Reference: 3612
Other Collection No: ATCC 25594; DSM 43249
Previous Catalogue Name: Rhodococcus terrae
Type Strain: Yes
Family: Nocardiaceae
Release Restrictions: Terms & Conditions of Supply of Microbial Pathogens: Safety
Conditions for growth on solid media: Chocolate blood agar, 48 hours, 37°C, requires carbon dioxide
Whole Genome Sequence: http://www.ebi.ac.uk/ena/data/view/ERS1092513
16S rRNA Gene Sequence: >gb|X81922|ATCC 25594T|G.terrae 16S rRNA gene (ATCC 25594T).| acgaacgctggcggc... >gb|AF536513|DSM 43249|Gordonia terrae strain DSM 43249 16S-23S ribosomal RNA intergenicspacer, complete sequence.| aaggagcacacaaca... >gb|AF536512|DSM 43249|Gordonia terrae strain DSM 43249 16S-23S ribosomal RNA intergenicspacer, complete sequence.| aaggagcacacaaca... >gb|AF536511|DSM 43249|Gordonia terrae strain DSM 43249 16S-23S ribosomal RNA intergenicspacer, complete sequence.| aaggagcacacaaca... >gb|AF536510|DSM 43249|Gordonia terrae strain DSM 43249 16S-23S ribosomal RNA intergenicspacer, complete sequence.| aaggagcacacacca...
23S rRNA Gene Sequence: >gb|AF536513|DSM 43249|Gordonia terrae strain DSM 43249 16S-23S ribosomal RNA intergenicspacer, complete sequence.| aaggagcacacaaca... >gb|AF536512|DSM 43249|Gordonia terrae strain DSM 43249 16S-23S ribosomal RNA intergenicspacer, complete sequence.| aaggagcacacaaca... >gb|AF536511|DSM 43249|Gordonia terrae strain DSM 43249 16S-23S ribosomal RNA intergenicspacer, complete sequence.| aaggagcacacaaca... >gb|AF536510|DSM 43249|Gordonia terrae strain DSM 43249 16S-23S ribosomal RNA intergenicspacer, complete sequence.| aaggagcacacacca...
Extended Bibliography: showhide Show bibliography
Ref #: 95490
Author(s): Ruimy,R.;Riegel,P.;Boiron,P.;Monteil,H.;Christen,R.
Journal: Int J Syst Bacteriol
Title: Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences
Volume: 45
Page(s): 740-6
Year: 1995
Keyword(s): GENBANK/X81904 GENBANK/X81905 GENBANK/X81906 GENBANK/X81907 GENBANK/X81908 GENBANK/X81909 GENBANK/X81910 GENBANK/X81912 GENBANK/X81913 GENBANK/X81914 GENBANK/X81915 GENBANK/X81916 GENBANK/X81917 GENBANK/X81918 GENBANK/X81919 GENBANK/X81920 GENBANK/X81921 GENBANK/X81922 GENBANK/X81923 GENBANK/X81924 GENBANK/X81925 GENBANK/X81926 GENBANK/X81927 GENBANK/X81928 GENBANK/X81929 GENBANK/X81930 GENBANK/X81931 GENBANK/X81932 GENBANK/X81933 GENBANK/X81934 Base Sequence Corynebacterium/+ACo-classification/genetics DNA, Bacterial/+ACo-chemistry DNA, Ribosomal/+ACo-chemistry Molecular Sequence Data Phylogeny
Remarks: We determined almost complete small-subunit ribosomal DNA sequences of 50 reference strains belonging to the genera Corynebacterium, Rhodococcus, and Gordona and compared these sequences with previously published sequences. Three phylogenetic methods (the neighbor-joining, maximum-likelihood, and maximum-parsimony methods), as well as a bootstrap analysis, were used to assess the robustness of each topology which we obtained. The results of comparative phylogenetic analyses confirmed that the genera Corynebacterium, Dietzia, Gordona, Mycobacterium, Nocardia, Tsukamurella, and Turicella form a monophyletic taxon within the phylum containing the high-Gcontent gram-positive bacteria. The genus Corynebacterium appeared to be a monophyletic unit whose members could be divided into four major clusters. The validity of the genus Turicella is doubtful since members of this genus clearly belong to the genus Corynebacterium. The variability of chemotaxonomic characteristics within the genus Corynebacterium suggests that small-subunit ribosomal DNA sequence analysis is probably the most straightforward method for confirming that a bacterium belongs to this genus.
URL: 7547293
Ref #: 12499
Author(s): Ruimy,R.;Riegel,P.;Boiron,P.;Monteil,H.;Christen,R.
Journal: Int J Syst Bacteriol
Title: Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences
Volume: 45
Page(s): 740-6
Year: 1995
Keyword(s): GENBANK/X81904 GENBANK/X81905 GENBANK/X81906 GENBANK/X81907 GENBANK/X81908 GENBANK/X81909 GENBANK/X81910 GENBANK/X81912 GENBANK/X81913 GENBANK/X81914 GENBANK/X81915 GENBANK/X81916 GENBANK/X81917 GENBANK/X81918 GENBANK/X81919 GENBANK/X81920 GENBANK/X81921 GENBANK/X81922 GENBANK/X81923 GENBANK/X81924 GENBANK/X81925 GENBANK/X81926 GENBANK/X81927 GENBANK/X81928 GENBANK/X81929 GENBANK/X81930 GENBANK/X81931 GENBANK/X81932 GENBANK/X81933 GENBANK/X81934 Base Sequence Corynebacterium/+ACo-classification/genetics DNA, Bacterial/+ACo-chemistry DNA, Ribosomal/+ACo-chemistry Molecular Sequence Data Phylogeny
Remarks: We determined almost complete small-subunit ribosomal DNA sequences of 50 reference strains belonging to the genera Corynebacterium, Rhodococcus, and Gordona and compared these sequences with previously published sequences. Three phylogenetic methods (the neighbor-joining, maximum-likelihood, and maximum-parsimony methods), as well as a bootstrap analysis, were used to assess the robustness of each topology which we obtained. The results of comparative phylogenetic analyses confirmed that the genera Corynebacterium, Dietzia, Gordona, Mycobacterium, Nocardia, Tsukamurella, and Turicella form a monophyletic taxon within the phylum containing the high-Gcontent gram-positive bacteria. The genus Corynebacterium appeared to be a monophyletic unit whose members could be divided into four major clusters. The validity of the genus Turicella is doubtful since members of this genus clearly belong to the genus Corynebacterium. The variability of chemotaxonomic characteristics within the genus Corynebacterium suggests that small-subunit ribosomal DNA sequence analysis is probably the most straightforward method for confirming that a bacterium belongs to this genus.
URL: 96016727
Ref #: 1300
Author(s): Skerman,V.B.D.;McGowan,V.;Sneath,P.H.A.(ed)
Journal: Int. J. Syst. Bacteriol.
Title: Approved Lists of Bacterial Names.
Volume: 30
Page(s): 225-420
Year: 1980
Ref #: 2184
Author(s): Goodfellow,M.;Alderson,G.
Journal: J. Gen. Microbiol.
Title: The actinomycete-genus Rhodococcus: a home for the "rhodochrous" complex.
Volume: 100
Page(s): 99-122
Year: 1977
Data: (ATCC 25594) Type strain / M. Tsukamura, Obu, Chita, Aichi-ken, Japan in 1970 / Soil in 1967
Accession Date: 04/02/2003
Authority: (Tsukamura 1971) Stackebrandt et al. 1989
Taxonomy: TaxLink: S1376 (Gordonia terrae (tsukamura 1971) stackebrandt et al. 1989) - Date of change: 16/06/2007 by NCTCUp to 16/06/2007: ? (NCTC 10669) - Date of change: 04/02/2003
Biosafety Responsibility: It is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country

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