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Bacteria Collection: Serratia odorifera

NCTC Number: NCTC 11214
Current Name: Serratia odorifera
Original Strain Reference: 1073
Other Collection No: ATCC 33077; CDC 1979-77; CIP 79.01; DSM 4582; ICPB 3995; 1073
Previous Catalogue Name: Serratia odorifera
Type Strain: Yes
Family: Enterobacteriaceae
Hazard Group (ACDP): 2
Release Restrictions: Terms & Conditions of Supply of Microbial Pathogens: Safety
Conditions for growth on solid media: Nutrient agar, 24 hours, 30°C, aerobic
Conditions for growth on liquid media: nutrient broth,37, aerobic
Isolated From: human, sputum
Whole Genome Sequence: http://www.ebi.ac.uk/ena/data/view/ERS485851
Annotated Genome: ftp://ftp.sanger.ac.uk/pub/project/pathogens/NCTC3000/...
16S rRNA Gene Sequence: >gb|AF286870|DSM 4582|Serratia odorifera DSM 4582 16S ribosomal RNA gene, partialsequence.| aggcctaacacatgc... >gb|AJ233432|DSM 4582|Serratia odorifera 16S rRNA gene (strain DSM 4582).| gctcagattgaacgc...
Miscellaneous Sequence Data: >gb|AJ300533|CIP 79.1T| ATCC 33077T|Serratia odorifera partial gyrB gene for DNA gyrase B subunitstrain CIP 79.1T, ATCC 33077T.| ataagtttgacgata...
Bibliography: GRIMONT P A D 1978 INT.J.SYST.BACT. 28 453 463
Extended Bibliography: showhide Show bibliography
Ref #: 45324
Author(s): Sproer,C.;Mendrock,U.;Swiderski,J.;Lang,E.;Stackebrandt,E.
Journal: Int J Syst Bacteriol
Title: The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae
Volume: 49 Pt 4
Page(s): 1433-8
Year: 1999
Keyword(s): GENBANK/AJ233400 GENBANK/AJ233401 GENBANK/AJ233402 GENBANK/AJ233403 GENBANK/AJ233404 GENBANK/AJ233405 GENBANK/AJ233406 GENBANK/AJ233407 GENBANK/AJ233408 GENBANK/AJ233409 GENBANK/AJ233410 GENBANK/AJ233411 GENBANK/AJ233412 GENBANK/AJ233413 GENBANK/AJ233414 GENBANK/AJ233415 GENBANK/AJ233416 GENBANK/AJ233417 GENBANK/AJ233418 GENBANK/AJ233419 GENBANK/AJ233420 GENBANK/AJ233421 GENBANK/AJ233422 GENBANK/AJ233423 GENBANK/AJ233424 GENBANK/AJ233425 GENBANK/AJ233426 GENBANK/AJ233427 GENBANK/AJ233428 GENBANK/AJ233429 etc. DNA, Ribosomal/genetics Enterobacteriaceae/classification/*genetics Molecular Sequence Data *Phylogeny Polymerase Chain Reaction/methods RNA, Ribosomal, 16S/genetics Sequence Analysis, DNA Serratia/classification/*genetics
Remarks: The phylogenetic relationships of the type strains of 38 species from 15 genera of the family Enterobacteriaceae were investigated by comparative 16S rDNA analysis. Several sequences of strains from the genera Citrobacter, Erwinia, Pantoea, Proteus, Rahnella and Serratia, analysed in this study, have been analysed previously. However, as the sequences of this study differ slightly from the published ones, they were included in the analysis. Of the 23 enterobacterial genera included in an overview dendrogram of relatedness, members of the genera Xenorhabdus, Photorhabdus, Proteus and Plesiomonas were used as a root. The other genera formed two groups which could be separated, although not exclusively, by signature nucleotides at positions 590-649 and 600-638. Group A contains species of Brenneria, Buttiauxella, Citrobacter, Escherichia, Erwinia, Klebsiella, Pantoea, Pectobacterium and Salmonella. All seven type strains of Buttiauxella share 16S rDNA similarities greater than 99%. Group B embraces two phylogenetically separate Serratia clusters, a lineage containing Yersinia species, Rahnella aquatica, Ewingella americana, and also the highly related pair Hafnia alvei and Obesumbacterium proteus.
URL: 10555323
Ref #: 95495
Author(s): Tan,Z.;Hurek,T.;Gyaneshwar,P.;Ladha,J.K.;Reinhold-Hurek,B.
Journal: Syst Appl Microbiol
Title: Novel endophytes of rice form a taxonomically distinct subgroup of Serratia marcescens
Volume: 24
Page(s): 245-51
Year: 2001
Keyword(s): GENBANK/AF286867 GENBANK/AF286868 GENBANK/AF286869 GENBANK/AF286870 GENBANK/AF286871 GENBANK/AF286873 GENBANK/AF286874 Bacterial Proteins/chemistry/genetics/metabolism Bacterial Typing Techniques DNA, Bacterial/analysis/genetics DNA, Ribosomal/analysis/genetics Molecular Sequence Data Nucleic Acid Hybridization Oryza sativa/*microbiology Phenotype Phylogeny Plant Roots/*microbiology RNA, Ribosomal, 16S/genetics Sequence Analysis, DNA Serratia marcescens/*classification/genetics/isolation & purification/physiology *Symbiosis
Remarks: Six endophytic strains isolated from surface-sterilized rice roots and stems of different rice varieties grown in the Philippines were characterized. They were analyzed by physiological and biochemical tests, SDS-PAGE of whole-cell protein patterns, DNA-DNA hybridization and 16S rDNA sequencing. SDS-PAGE of whole-cell patterns showed that the six isolates fell into two subgroups which were similar but not identical in protein patterns to S. marcescens. The phylogenetic analysis of 16S rDNA sequences of two representative strains IRBG 500 and IRBG 501 indicated that they were closely related to S. marcescens (more than 99% identity). Physiological and biochemical tests corroborated that the isolates were highly related to each other and to S. marcescens. In cluster analysis, all six isolates were clustered together at 93% similarity level and grouped closely with Serratia marcescens at 86% similarity level. DNA-DNA hybridization studies revealed that the isolates shared high similarity levels with S. marcescens (> or =86% DNA-DNA binding), indicating they belong to the same species. However, the isolates differed in several biochemical characteristics from the type strain. They produce urease and utilize urea and L(+) sorbose as a substrate, which is different from all known Serratia reference strains. These results suggest that the six endophytic isolates represent a novel, non-pigmented subgroup of S. marcescens.
URL: 11518328
Ref #: 48709
Author(s): Dauga,C.
Journal: Int J Syst Evol Microbiol
Title: Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies
Volume: 52
Page(s): 531-47
Year: 2002
Keyword(s): GENBANK/AJ300528 GENBANK/AJ300529 GENBANK/AJ300530 GENBANK/AJ300531 GENBANK/AJ300532 GENBANK/AJ300533 GENBANK/AJ300534 GENBANK/AJ300535 GENBANK/AJ300536 GENBANK/AJ300537 GENBANK/AJ300538 GENBANK/AJ300539 GENBANK/AJ300540 GENBANK/AJ300541 GENBANK/AJ300542 GENBANK/AJ300543 GENBANK/AJ300544 GENBANK/AJ300545 GENBANK/AJ300546 GENBANK/AJ300547 GENBANK/AJ300548 GENBANK/AJ300549 GENBANK/AJ300550 GENBANK/AJ300551 GENBANK/AJ300552 GENBANK/AJ300553 GENBANK/AJ300554 DNA Gyrase/*genetics Enterobacteriaceae/*classification/genetics Evolution, Molecular Genes, rRNA Molecular Sequence Data Phenotype RNA, Bacterial/chemistry RNA, Ribosomal, 16S/chemistry
Remarks: Phylogenetic trees showing the evolutionary relatedness of Enterobacteriaceae based upon gyrB and 16S rRNA genes were compared. Congruence among trees of these molecules indicates that the genomes of these species are not completely mosaic and that molecular systematic studies can be carried out. Phylogenetic trees based on gyrB sequences appeared to be more reliable at determining relationships among Serratia species than trees based on 16S rRNA gene sequences. gyrB sequences from Serratia species formed a monophyletic group validated by significant bootstrap values. Serratia fonticola had the most deeply branching gyrB sequence in the Serratia monophyletic group, which was consistent with its atypical phenotypic characteristics. Klebsiella and Enterobacter genera seemed to be polyphyletic, but the branching patterns of gyrB and 16S rRNA gene trees were not congruent. Enterobacter aerogenes was grouped with Klebsiella pneumoniae on the gyrB phylogenetic tree, which supports that this species could be transferred to the Klebsiella genus. Unfortunately, 16S rRNA and gyrB phylogenetic trees gave conflicting evolutionary relationships for Citrobacter freundii because of its unusual gyrB evolutionary process. gyrB lateral gene transfer was suspected for Hafnia alvei. Saturation of gyrB genes was observed by the pairwise comparison of Proteus spp., Providencia alcalifaciens and Morganella morganii sequences. Depending on their level of variability, 16S rRNA gene sequences were useful for describing phylogenetic relationships between distantly related Enterobacteriaceae, whereas gyrB sequence comparison was useful for inferring intra- and some intergeneric relationships.
URL: 11931166
Ref #: 12300
Author(s): Sproer,C.;Mendrock,U.;Swiderski,J.;Lang,E.;Stackebrandt,E.
Journal: Int J Syst Bacteriol
Title: The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae
Volume: 49 Pt 4
Page(s): 1433-8
Year: 1999
Keyword(s): GENBANK/AJ233400 GENBANK/AJ233401 GENBANK/AJ233402 GENBANK/AJ233403 GENBANK/AJ233404 GENBANK/AJ233405 GENBANK/AJ233406 GENBANK/AJ233407 GENBANK/AJ233408 GENBANK/AJ233409 GENBANK/AJ233410 GENBANK/AJ233411 GENBANK/AJ233412 GENBANK/AJ233413 GENBANK/AJ233414 GENBANK/AJ233415 GENBANK/AJ233416 GENBANK/AJ233417 GENBANK/AJ233418 GENBANK/AJ233419 GENBANK/AJ233420 GENBANK/AJ233421 GENBANK/AJ233422 GENBANK/AJ233423 GENBANK/AJ233424 GENBANK/AJ233425 GENBANK/AJ233426 GENBANK/AJ233427 GENBANK/AJ233428 GENBANK/AJ233429 etc. DNA, Ribosomal/genetics Enterobacteriaceae/classification/*genetics Molecular Sequence Data *Phylogeny Polymerase Chain Reaction/methods RNA, Ribosomal, 16S/genetics Sequence Analysis, DNA Serratia/classification/*genetics
Remarks: The phylogenetic relationships of the type strains of 38 species from 15 genera of the family Enterobacteriaceae were investigated by comparative 16S rDNA analysis. Several sequences of strains from the genera Citrobacter, Erwinia, Pantoea, Proteus, Rahnella and Serratia, analysed in this study, have been analysed previously. However, as the sequences of this study differ slightly from the published ones, they were included in the analysis. Of the 23 enterobacterial genera included in an overview dendrogram of relatedness, members of the genera Xenorhabdus, Photorhabdus, Proteus and Plesiomonas were used as a root. The other genera formed two groups which could be separated, although not exclusively, by signature nucleotides at positions 590-649 and 600-638. Group A contains species of Brenneria, Buttiauxella, Citrobacter, Escherichia, Erwinia, Klebsiella, Pantoea, Pectobacterium and Salmonella. All seven type strains of Buttiauxella share 16S rDNA similarities greater than 99%. Group B embraces two phylogenetically separate Serratia clusters, a lineage containing Yersinia species, Rahnella aquatica, Ewingella americana, and also the highly related pair Hafnia alvei and Obesumbacterium proteus.
URL: 20023023
Ref #: 13698
Author(s): Tan,Z.;Hurek,T.;Gyaneshwar,P.;Ladha,J.K.;Reinhold-Hurek,B.
Journal: Syst Appl Microbiol
Title: Novel endophytes of rice form a taxonomically distinct subgroup of Serratia marcescens
Volume: 24
Page(s): 245-51
Year: 2001
Keyword(s): GENBANK/AF286867 GENBANK/AF286868 GENBANK/AF286869 GENBANK/AF286870 GENBANK/AF286871 GENBANK/AF286873 GENBANK/AF286874 Bacterial Proteins/chemistry/genetics/metabolism Bacterial Typing Techniques DNA, Bacterial/analysis/genetics DNA, Ribosomal/analysis/genetics Molecular Sequence Data Nucleic Acid Hybridization Oryza sativa/*microbiology Phenotype Phylogeny Plant Roots/*microbiology RNA, Ribosomal, 16S/genetics Sequence Analysis, DNA Serratia marcescens/*classification/genetics/isolation & purification/physiology Support, Non-U.S. Gov't *Symbiosis
Remarks: Six endophytic strains isolated from surface-sterilized rice roots and stems of different rice varieties grown in the Philippines were characterized. They were analyzed by physiological and biochemical tests, SDS-PAGE of whole-cell protein patterns, DNA-DNA hybridization and 16S rDNA sequencing. SDS-PAGE of whole-cell patterns showed that the six isolates fell into two subgroups which were similar but not identical in protein patterns to S. marcescens. The phylogenetic analysis of 16S rDNA sequences of two representative strains IRBG 500 and IRBG 501 indicated that they were closely related to S. marcescens (more than 99% identity). Physiological and biochemical tests corroborated that the isolates were highly related to each other and to S. marcescens. In cluster analysis, all six isolates were clustered together at 93% similarity level and grouped closely with Serratia marcescens at 86% similarity level. DNA-DNA hybridization studies revealed that the isolates shared high similarity levels with S. marcescens (> or =86% DNA-DNA binding), indicating they belong to the same species. However, the isolates differed in several biochemical characteristics from the type strain. They produce urease and utilize urea and L(+) sorbose as a substrate, which is different from all known Serratia reference strains. These results suggest that the six endophytic isolates represent a novel, non-pigmented subgroup of S. marcescens.
URL: 21409112
Ref #: 1300
Author(s): Skerman,V.B.D.;McGowan,V.;Sneath,P.H.A.(ed)
Journal: Int. J. Syst. Bacteriol.
Title: Approved Lists of Bacterial Names.
Volume: 30
Page(s): 225-420
Year: 1980
Ref #: 3038
Author(s): Grimont,P.A.D.;Grimont,F.;Richard,C.;Davis,B.R.;Steigerwalt,A.G.;Brenner,D.J.
Journal: Int. J. Syst. Bacteriol.
Title: Deoxyribonucleic acid relatedness between Serratia plymuthica and other Serratia species, with a description of Serratia odorifera sp. nov. (Type strain: ICPB 3995).
Volume: 28
Page(s): 453-463
Year: 1978
Data: (ICPB 3995, CDC 1979-77) Type strain / P. A. D. Grimont, Institut Pasteur, Paris in 1978 / Sputum in 1974 / Grimont, P. A. D. et al. (1978) Int. J. syst. Bact. 28, 453-463
Accession Date: 01/01/1978
History: ISOLATED BY GRIMONT P A D ,1974 ,INST.PASTEUR ,PARIS
Authority: Grimont et al. 1978 (AL)
Depositor: GRIMONT P A D
Taxonomy: TaxLink: S2703 (Serratia odorifera Grimont et al. 1978) - Date of change: 5/02/2003
Biosafety Responsibility: It is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country

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